کتاب راهنمای زیست‌شناسی مولکولی محاسباتی ۲۰۰۵
Handbook of Computational Molecular Biology 2005

1. Cover

2. Title

3. Copyright

4. Dedication

5. Preface

6. Acknowledgments

7. About the Editor

8. Contributors

9. Contents

10. Part I: Sequence Alignments

11. Chapter 1: Pairwise Sequence Alignment

12. Chapter 2: Spliced Alignment and Similarity-based Gene Recognition

13. Chapter 3: Multiple Sequence Alignment

14. Chapter 4: Parametric Sequence Alignment

15. Part II: String Data Structures

16. Chapter 5: Lookup Tables, Suffix Trees and Suffix Arrays

17. Chapter 6: Suffix Tree Applications in Computational Biology

18. Chapter 7: Enhanced Suffix Arrays and Applications

19. Part III: Genome Assembly and EST Clustering

20. Chapter 8: Computational Methods for Genome Assembly

21. Chapter 9: Assembling the Human Genome

22. Chapter 10: Comparative Methods for Sequence Assembly

23. Chapter 11: Information Theoretic Approach to Genome Reconstruction

24. Chapter 12: Expressed Sequence Tags: Clustering and Applications

25. Chapter 13: Algorithms for Large-Scale Clustering and Assembly of Biological Sequence Data

26. Part IV: Genome-Scale Computational Methods

27. Chapter 14: Comparisons of Long Genomic Sequences: Algorithms and Applications

28. Chapter 15: Chaining Algorithms and Applications in Comparative Genomics

29. Chapter 16: Computational Analysis of Alternative Splicing

30. Chapter 17: Human Genetic Linkage Analysis

31. Chapter 18: Haplotype Inference

32. Part V: Phylogenetics

33. Chapter 19: An Overview of Phylogeny Reconstruction

34. Chapter 20: Consensus Trees and Supertrees

35. Chapter 21: Large-scale Phylogenetic Analysis

36. Chapter 22: High-Performance Algorithms for Phylogeny Reconstruction with Maximum Parsimony

37. Part VI: Microarrays and Gene Expression Analysis

38. Chapter 23: Microarray Data: Annotation, Storage, Retrieval and Communication

39. Chapter 24: Computational Methods for Microarray Design

40. Chapter 25: Clustering Algorithms for Gene Expression Analysis

41. Chapter 26: Biclustering Algorithms: A Survey

42. Chapter 27: Identifying Gene Regulatory Networks from Gene Expression Data

43. Chapter 28: Modeling and Analysis of Gene Networks Using Feedback Control Theory

44. Part VII: Computational Structural Biology

45. Chapter 29: Predicting Protein Secondary and Supersecondary Structure

46. Chapter 30: Protein Structure Prediction with Lattice Models

47. Chapter 31: Protein Structure Determination via NMR Spectral Data

48. Chapter 32: Geometric and Signal Processing of Reconstructed 3D Maps of Molecular Complexes

49. Chapter 33: In Search of Remote Homolog

50. Chapter 34: Biomolecular Modeling using Parallel Supercomputers

51. PartVIII: Bioinformatic Databases and Data Mining

52. Chapter 35: String Search in External Memory: Data Structures and Algorithms

53. Chapter 36: Index Structures for Approximate Matching in Sequence Databases

54. Chapter 37: Algorithms for Motif Search

55. Chapter 38: Data Mining in Computational Biology

56. Index